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Clinical Microbiology Reviews, July 2007, p. 459-477, Vol. 20, No. 3
0893-8512/07/$08.00+0 doi:10.1128/CMR.00039-06
Copyright © 2007, American Society for Microbiology. All Rights Reserved.
U.S. Geological Survey, St. Petersburg, Florida 33701
SUMMARY INTRODUCTION OCCURRENCE Bacteria Fungi Viruses PATHOGENS Bacteria Fungi Viruses Unknown Agents DETECTION Collection Identification CONCLUSIONS AND PERSPECTIVES ACKNOWLEDGMENTS REFERENCES
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| INTRODUCTION |
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2,100 km2 year1 (266). Other regions of known dust storm activity include the arid regions of the continental United States (the Great Basin), Central America, South America (Salar de Uyuni), Central Australia, South Africa (Etosha and Mkgadikgadi basins), and the Middle East (244). In general, high-energy wind conditions in arid regions can result in the mobilization of significant quantities of soils into the atmosphere, and large dust storm events are capable of continent-wide, transoceanic, and global dispersion (68, 193).
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Asian dust storms can take from 7 to 9 days to cross the Pacific Ocean. Dust storms moving off the west coast of Africa can take from 3 to 5 days to reach the Caribbean and Americas. As Fig. 1 illustrates, continuous transmission off the North African deserts can result in prolonged exposure of individuals living at considerable distances (the Caribbean and Americas) from the source of particulates. Using a handheld laser particle counter, I recorded a background particulate load of 2.6 x 106 airborne particles m3 at a location south of Tampa Bay, Florida, on 15 July 2005. During an African dust event that occurred from 25 to 28 July 2005, the particle count in the same region south of Tampa Bay on 25 July was 26.1 x 106 particles m3. Ninety-nine percent of the particles were within a size range of >0.3 µm to <1.0 µm, the sub-2.5-µm fraction that can penetrate deep into the lung environment (Fig. 1C is an image of that dust event period). These data demonstrate the ability of dust storms to impact air quality at significant distances from their sources (Tampa Bay is >6,500 km west of the coast of North Africa). A higher risk to human health would obviously be associated with populations closer to dust source regions, as this excerpt regarding the American Dust Bowl period illustrates:
It is stated by some authorities that man breathes, on an average, approximately 25 pounds of air daily. Nelson's "Loose Leaf Living Medicine" says that a normal individual inhales 30.5 cubic inches of air at each breath and breathes 17 times per minute. Then with an average of 0.0368 g of dust per cubic foot of air over a period of ten hours (the average duration of the dust storms) the straining apparatus of the respiratory system is confronted with a very large task. From above figures it can be computed that an individual breathes 6.6240 g of dust during an average dust storm (18).
Every human breath taken is laden with particulate matter, and human evolution produced the most obvious and familiar front line of defense, nose hair. Less obvious are the mucus glands that line our airways. These glands function to trap and aid in the expulsion of particulates via secretion, ciliated transport, and ingestion or cough. Of particular concern are particles of <10 µm in size that can penetrate into the lungs and those of <2.5 µm that may penetrate into deep lung tissue and the subepithelial environment. These very small particles cause adverse health effects via oxidative stress (47, 52, 263). The deposition rate of ultrafine particles (<100 nm) in the lungs has been shown to increase as particle size decreases and to increase with exercise versus resting (46). Health studies conducted in urban and suburban environments have demonstrated mortality risk with exposure to particulate matter and have attributed this risk to anthropogenic particulates generated through automotive and industrial combustion versus those of crustal origin (130, 210). Several studies conducted to investigate the role of dust storms that consist of concentrated crustal particulates have shown an associated allergic, asthma, and silicosis/pulmonary fibrosis risk (36, 127, 173, 180, 202, 259). Areas impacted by desert dust storms, such as communities in the Middle East and the Caribbean, are known to have some of the highest incidences of asthma on the planet (8, 16, 96). On the Caribbean island of Barbados, the incidence of asthma increased 17-fold between 1973 and 1996, a period that coincided with increased flux of African dust to the area of the island (97, 188). Gyan et al. recently demonstrated a link between African dust and pediatric respiratory stress on the southern Caribbean island of Trinidad (85). Allergens commonly associated with dust storms include fungal spores, plant and grass pollens, anthropogenic emissions, and organic detritus (62, 103, 125).
Desert dust cloud toxicity may be influenced by anthropogenic material as a result of particulate/pollutant aerosolization during cloud formation or cloud capture during downwind transport (adsorption of pesticides, herbicides, and industrial emissions, etc.). Inherent toxicity is due to differences in native soil elemental composition (metals and naturally occurring or synthetic radioisotopes, etc.), atmospheric chemical alteration, size fractionation, and extreme particulate load (5, 44, 88, 131, 174, 176, 263). Toxic metals such as arsenic and mercury have been shown to occur in airborne desert dust in downwind environments at concentrations higher than regional crustal concentrations (93). In addition to the presence of these toxic metals, dust can indirectly impact human health by spurring toxic algal blooms in coastal environments (i.e., red tides, in which marine organisms utilize dust components such as iron as a nutrient in nutrient-depleted waters) (93, 138, 243). Dust clouds may contain high concentrations of organics composed of plant detritus and microorganisms (80, 108) and may pick up additional biological loads (fungal spores, bacteria, viruses, and pollen, etc.) as the clouds move through and sandblast downwind terrestrial environments and/or over aquatic environments through the adhesion of microbe-laden fine aquatic sprays to dust particles. All of these potential dust cloud constituents may negatively influence human health in regional and downwind environments, with the greatest risk factors being frequency of exposure, concentration of and composition of particulates, and immunological status. Dust-borne microorganisms in particular can directly impact human health via pathogenesis, exposure of sensitive individuals to cellular components (pollen and fungal allergens and lipopolysaccharide [LPS], etc.), and the development of sensitivities (i.e., asthma) through prolonged exposure. Dust-borne dispersion of microorganisms may also play a significant role in the biogeographical distribution of both pathogenic and nonpathogenic species, as long-range atmospheric transport routes and concentrations shift through time due to climatic and geologic change (148, 163).
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Reflecting on the whole of this, I conclude that the germs float through the atmosphere in groups or clouds, and that now and then a cloud specifically different from the prevalent ones is wafted through the air. The touching of a nutritive fluid by a Bacteria cloud would naturally have a different effect from the touching of it by the sterile air between two clouds. But, as in the case of a mottled sky, the various portions of the landscape are successively visited by shade, so, in the long run, are the various tubes of our tray touched by the Bacterial clouds, the final fertilization or infection of them all being the consequence (236).
107 (forest) to 109 (arid and other soil types) prokaryotes (247). These populations are believed to consist of
10,000 bacterial types with
0.1% of the total population composing
99.9% of the diversity (67, 233, 234). Studies that have examined the number of culturable prokaryotes in desert soils have reported concentrations ranging from 0 to
107 gram1 (126, 144, 169). Dominant phyla found in soils, as determined by their prevalence in sequence libraries, include the Proteobacteria, Acidobacteria, and Actinobacteria (110). Although this community composition is determined by a number of factors, including pH, temperature, elemental composition, and nutrient and moisture content, members of other phyla also occur less frequently (67, 110). Pigments produced by desert soil taxa such as Nostoc sp. and Scytonema sp. are believed to provide UV shielding compared to less-pigmented community members (21). Novel or rare actinomycetes (Citricoccus alkalitolerans, Jiangella gansuensis, and species of Nocardiopsis and Saccharothrix) have been isolated from a number of desert soil samples collected in the deserts of both Africa and Asia (216, 267). Similar to the potential hazards of life in the soil, atmospheric sources of stress to airborne microorganisms include UV damage, desiccation (drying by wind), temperature (both low and high temperatures depending on the tolerance range of an organism), and atmospheric chemistry (humidity levels dependent on tolerance and oxygen radicals, etc.) (54, 76, 158). Dust-borne transport of microorganisms, particularly over aquatic environments, should be enhanced due to tolerable humidity levels and attenuation of UV by the particle load of the various dust clouds (78). NASA research has shown that the particle load of large dust clouds can attenuate UV by more than 50% (91).
Table 1 lists the genera identified in dust storm microbiology studies as described below. While it would be interesting to compare and contrast the diversity of isolates identified in each study, it should be noted that some relied on microscopy for identification while others employed molecular methods. It should also be emphasized that all were culture-based studies and few utilized like assays (i.e., collection and culture media, etc.), which restricts the comparison of data.
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15°N, 45°W) during periods of elevated African desert dust concentrations consisted of 13 genera, with those dominant being Bacillus (32%), Gordonia (12%), and Staphylococcus (8%) (83). When African dust was visibly present in the northern Caribbean air, a subset of isolates from various samples was identified by 16S rRNA gene sequences as consisting of 25 genera (78, 79). The most dominant genera detected in these samples were Microbacterium (14.4%), Sphingomonas (7.2%), Bacillus (6.5%), and Streptomyces (4.0%). Eleven of the isolates (closest GenBank neighbor) had previously been identified in marine environments, demonstrating that aerosolized marine spray may adhere to dust particles as the clouds move over marine environments (78, 79). The few other dust storm-related studies devoted to the prevalence of bacteria in atmospheric samples were based on the presence of spores (in aerobic culture; i.e., species of Bacillus were identified) or other cellular morphologies (19, 126, 190) or on only reported CFU (39).
Concentrations of bacteria observed during dust storms are noted in Table 2. Between April and November 1934, 30 flights were conducted at altitudes of 0 to 7,772 m in the vicinity of Boston, MA, to collect air samples for microbial analysis (187). Flight 4 recovered samples at altitudes of 457 to 7,772 m at a time when visibility was hampered by dust transported within air masses from over the tropical Atlantic (area of the Sargasso Sea). These samples resulted in the growth of 16 to 266 bacteria (overall average of the five samples, 144) and 11 to 43 fungi (overall average of five samples, 23) m3 of air (187). These CFU counts were by far the highest combined (bacterial and fungal) counts for all of the flights (for the other 29 flights, there were 137 samples yielding 0 to 138 bacterial CFU, average 14, and 0 to 267 fungal CFU, average 11). Flight 4 was the only flight of the 30 to be affected by Transatlantic dust (187). In Kansas, in 1935, numbers of bacteria on nutrient agar settle plates exposed to dust storms ranged from 2,880 to 42,735 m2 min1 (23). Images of a clear-day petri dish and a dust storm petri dish (both plates exposed to the atmosphere for 1.5 min.) showed fewer than 10 colonies isolated on the clear day and overgrowth on the dust storm plate (23). Atmospheric samples collected by plane from three altitudes (365, 1,280, and 2,500 m) over Junction, TX, demonstrated that the highest concentrations of bacterial and fungal isolates occurred when dust generated by frontal activity was present (66). Graph-based data showed >1,544 combined CFU m3 at the 365-m altitude versus <450 combined CFU m3 at each of the three altitudes during normal/no-dust conditions. The lowest CFU collections (<100 at each altitude) followed frontal precipitation events (66). In Saudi Arabia, an increase of 100% over background levels was observed during dust storms with a settle plate technique. Kellogg et al. (117) reported background levels of 200 to 1,100 bacterial CFU m3 in the atmosphere over Bamako, Mali, Africa, and dust condition levels ranging from 720 to 15,700 bacterial CFU m3. During two Saharan dust events impacting Israel's atmosphere (January and April 2004), airborne bacteria averaged 844 CFU m3, versus a 2-day background average of 93 CFU m3, and ratios of total CFU (bacteria and fungi) for dust days versus non-dust days were similar to those reported by Griffin et al. in the Caribbean (207). At Erdemli, Turkey, dust event bacterial concentrations ranged from 0 to 59 CFU m3 (average, 6), versus background concentrations of 0 to 41 CFU m3 (average, 3) (82). In the northern Caribbean (
18°N), normal background concentrations of bacteria in air samples collected over the islands and open water averaged 13.6 CFU m3 (28 samples) (79). The same study noted an increase in airborne bacterial CFU (average, 80.1 CFU m3 [15 samples]) when African desert dust was visibly present in the atmosphere, with the higher concentrations (average, 143.1 CFU m3; n, 8) occurring during late July and early August (79). Dust-borne microbial concentrations in the early summer (May, June, and early July) were not distinguishable above normal background levels in this Caribbean research site (79). To determine if bacteria and fungi being transported to the Caribbean in the early summer months of May and June could be detected in air samples at a site closer to the continent of Africa, a study was conducted over the mid-Atlantic ridge at 15°N over a 6-week period (22 May to 30 June 2003). Results showed that bacterial CFU ranged from 0.1 CFU to 23.7 CFU m3 when culturable bacteria were recovered from the air samples (12 of 85 samples) (83). The U.S. Navy's Naval Aerosol Analysis and Prediction System, an atmospheric model that can determine airborne aerosol concentrations at various altitudes on a global scale (94, 114, 196, 209), demonstrated that most of the microorganisms recovered in the mid-Atlantic study were recovered during periods of elevated aerosol (dust) concentrations (83). On the island of Barbados, at
13.1°N in the southern Caribbean, African desert dust-borne bacterial CFU (morphological identifications were via spore staining, and almost all were identified as Bacillus sp.) ranged from 0.0 to approximately 20.0 CFU m3, with the highest concentrations occurring primarily during the summer (190). During Asian dust events impacting air quality in Taejon, Korea, the bacterial CFU concentration increased on average 4.3 times over that observed under normal atmospheric conditions (39).
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In a survey of airborne fungi in the eastern and western deserts of Egypt, 44 genera and 102 species (Aspergillus was the dominant genus) were recovered, with the areas of highest fungal concentrations and diversity corresponding to increases in vegetative cover and anthropogenic activity (107). The most prevalent fungal genera in airborne dust samples collected from the atmosphere of Taif, Saudi Arabia, were (31 genera and 70 species) Aspergillus, Drechslera, Fusarium, Mucor, Penicillium, Phoma, and Stachybotrys, and it was noted that genus prevalence was dependent on the nutrient medium used (3). A similar study conducted in Egypt identified 27 genera (64 species), and again, prevalence was determined by the nutrient medium employed (4). While most studies have shown that desert environments harbor diverse mycological communities, fungi such as Coccidioides immitis and Coccidioides posadasii are known to be restricted geographically (the Americas in this case) (90). In contrast to microbial studies of soil or air environments, far fewer studies have been devoted to dust-borne transport of microorganisms. Table 1 lists those fungal genera found in dust storm studies where dust-associated isolates were identified to at least the genus level. Several studies, while identifying bacterial and or fungal isolates, did not distinguish those recovered during clear versus dust conditions and thus are not included in Table 1 (66, 187). As can be seen from Table 1, the dust-associated fungal community is diverse, and the true extent of diversity is probably much greater given that some of the more recent studies, which used molecular methods for identification, identified only a small fraction of the cultured isolates due to budget constraints (78, 79, 82, 117). Concentrations of fungal CFU and spores observed during dust storms at various geographical locations are noted in Table 2. In all cases, with the exception of the data reported by Choi et al. (39) (Table 2), the presence of desert dust in the atmosphere resulted in an increase in the concentration of culturable fungi or fungal spores relative to background or clear atmospheric conditions.
108 per gram (198, 252). Certain desert soil characteristics (high temperatures, elemental composition [the ability of viruses to adsorb to soil particulates], soil chemistry [pH], and moisture content) are known to impact viral survival and thus community composition and concentration (260). Poliovirus and bacteriophage MS2 survival in seeded desert soil samples was limited in the summer months when temperatures of
33.0°C and a decrease in soil moisture content (from 40% to <5%) were recorded (in comparison to winter survival) (222). Low pH, low moisture, and high concentrations of clay, cations, and total dissolved solids have been shown to enhance virus survival by increasing adsorption of viruses to other soil constituents (99, 215, 260). As in soil, milder temperatures and moderate to high humidity (50 to 80%, depending on the virus type) favor viral survival in aerosols, with atmospheric transport over open bodies of water (higher humidity versus that of overland environments) favoring long-range dispersion and infection (70, 104, 217). Bacteriophages that integrate their genome into the host genome (prophage) may be more apt to survive long-range atmospheric transport than are virulent phages (phages that directly replicate and lyse host cells following infection and therefore do not benefit from the shielding potential of a host cell). The scientific community has yet to address this topic of research. Since prophages are persistent in environmental bacterial populations and are important vectors of bacterial virulence factors (and other genomic material), these organisms may play an unforeseen role in the global dispersion of prokaryotic genomic information through long-range atmospheric dispersion (30, 146). Viral transmission in aerosols (influenza viruses and rhinoviruses, etc.) has been reviewed, and most of the documented cases have been limited to short-range laboratory tests (animal and human hosts) or indoor studies in hospitals (206). Data referencing long-range transmission of infectious viruses have been obtained only with aerosol models (no field detection of the aerosolized virus) (206). Several papers have hypothesized transoceanic movement of viruses through the atmosphere based on favorable atmospheric conditions (i.e., wind patterns, mild temperatures) and incidence of disease (81, 87). One research project that used a direct-count assay (use of a nucleic acid stain to count microorganisms via epifluorescence microscopy) to tabulate the number of virus-like particles in U.S. Virgin Island atmospheric samples reported a background concentration of 1.8 x 104 m3 and an African dust event concentration of 2.13 x 105 m3 (78). In summary, little research has been conducted to address the naturally occurring populations of desert soil viral communities, those viruses introduced by humans and other animals, or occurrence and survival issues associated with airborne desert soils. | PATHOGENS |
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Five viable isolates of Neisseria meningitidis recently identified in settled-dust samples from Kuwait demonstrate that dust can serve as a carrier for the pathogen (141). Other pathogens were also identified in this project (141), including Staphylococcus aureus (wide range of infections), Bacillus circulans, (opportunistic), Bacillus licheniformis (opportunistic, peritonitis), Pantoea agglomerans (opportunistic, peritonitis), Ralstonia paucula, (opportunistic, septicemia, peritonitis, abscess, and tenosynovitis), and Cryptococcus albidus (opportunistic, disseminated) (13, 122, 136, 140, 159, 179). Given the current state of affairs in the Middle East, many of these opportunistic dust-borne pathogens may play a significant role in human health with regard to combat-related injuries, treatment, and recovery.
Bacterial species that are known human pathogens have been collected during dust events in Bamako, Mali (117). The species include Acinetobacter calcoaceticus (nosocomial respiratory tract infections), Corynebacterium aquaticum (urinary tract infections), Gordonia terrae (nervous system, skin), a Kocuria sp. found in advanced noma lesions in Nigerian children, and Kocuria rosea (bacteremia) (10, 28, 55, 117, 147, 181, 226). Additionally, Acinetobacter calcoaceticus has been linked to mad cow disease, and another isolate, Staphylococcus xylosus, was previously identified as the causative agent of septicemia in a loggerhead turtle in the Canary Islands (117, 229, 232). Of the 95 bacteria identified in this study, Kellogg et al. reported that approximately 10% were potential animal pathogens, 5% were potential plant pathogens, and 25% were opportunistic human pathogens (117). In the African dust corridor over the mid-Atlantic ridge, two of the human pathogens identified in the Mali dust study (83, 117), Kocuria rosea and Gordonia terrae, were also recovered when elevated concentrations of African dust were present in the atmosphere (83). Furthermore, atmospheric dust-borne bacteria isolated in this mid-Atlantic study that are recognized as pathogens included Brevibacterium casei (opportunistic, sepsis) and Staphylococcus epidermidis (opportunistic, endocarditis, urinary tract infections) (22, 254). In the atmosphere over the U.S. Virgin Islands, the opportunistic pathogen Pseudomonas aeruginosa, which can cause fatal infections in burn patients, was isolated when African dust was present (79). Additionally, identified microorganisms found in a Nigerian noma lesion study were also isolated (GenBank closest neighbor similarities: Kocuria sp., 97%; Microbacterium arborescens, 98%; Sphingomonas sp., 96%) (79). At Erdemli, Turkey, Kocuria rosea, Corynebacterium aquaticum (opportunistic, urinary tract infections, sepsis), and Massilia timonae (which has been isolated from the blood of an immunocompromised patient) were isolated during dust events (82, 133, 162, 226). Other desert dust studies included isolates of Bacillus, although no specific species-level pathogenic identifications were made (20, 190).
The bacterial endotoxin LPS can also directly impact human health via inhalation (205). LPS is a cell wall component of gram-negative bacteria and is commonly found in organic dusts (240). Human and animal inhalation trials have shown increases in neutrophils and lymphocytes with a reduction in alveolar macrophage phagocytosis (205). Short-term exposure can result in fever and reduced airflow. Long-term exposure can result in the development of lung diseases such as asthma, bronchitis, and irreversible airflow obstruction (240). Since gram-negative bacteria are dominant in marine waters, aerosolized marine bacteria that adhere to traversing dust particles may enhance dust cloud toxicity and affect human health in coastal environments that are typically impacted by significant quantities of desert dust. African dust reaches coastal communities in Europe, the Middle East, the Caribbean, and the Americas. Asian dust reaches Korea, Taiwan, Okinawa, Japan, regional islands, the Artic, and North America. Approximately half of the bacteria found in African dust studies conducted in the Caribbean were gram-negative bacteria. Given the volume of annual African dust exposure, LPS may contribute to the high incidence of asthma in the region (79, 96). Sea spray generation in near-shore environments may also produce elevated humidity levels in near-surface atmospheric layers, which can both concentrate and "rain out" dust-borne pathogens and toxins, thus increasing exposure and risk.
It is obvious from the few dust-borne microbiology studies that have identified pathogenic bacteria that there is some degree of human health risk associated with exposure to airborne desert dust. While most of the pathogens identified to date are opportunistic in nature, these are but a small number of culture-based studies, and as in most outbreaks of disease it is often the young, old, and immunocompromised who are within the higher levels of risk. These few studies provide a glimpse of risk evidence and highlight the need for non-culture-based assays to advance this field of study.
In 1941 several air fields were established in the southern San Joaquin Valley. Coccidioidal infection was recognized to be a hazard, but it was preferred to the hazards of mountains and fog in alternative locations. During the first year clouds of dust billowed over the fields, and a quarter of the susceptible personnel became infected. C. E. Smith, appointed consultant to the Secretary of War, proposed rigid dust control measures. Roads were paved, air strips were hard-surfaced, and swimming pools were substituted for dusty athletic fields. Lawns were planted by the acre, and military personnel were ordered, at risk of court martial, to avoid unprotected areas as much as possible (64).
The most well-known human pathogen associated with desert dust storms is the fungus Coccidioides immitis (64). This fungus has been found only in the Americas. Annual outbreaks following dust storms (the primary means of exposure) or dust clouds generated from natural disasters or anthropogenic activity (e.g., earthquakes and construction, etc.) are well documented (90, 113, 178, 208). An outbreak at a Naval Air Station in California following a large dust storm event resulted in a coccidioidomycosis incidence rate of 36 per 100,000 for personnel classified as white and 254 per 100,000 for those classified as nonwhite, indicating differences in racial susceptibility (250). In Arizona, an increase in annual cases from 33 per 100,000 in 1998 to 43 per 100,000 in 2001 was attributed to climate change (increased wind speed and drought), with peak periods occurring in the winter and the age group at highest risk being those
65 years old (33, 178). Of 128 studied cases of coccidioidomycosis that occurred between 1 September and 31 December 1991 in Tulare County, CA, males, Asians and blacks, and those over 20 years old were identified as the highest risk groups (57). In addition to wind-generated dust storms, an outbreak of coccidioidomycosis resulting in 203 cases and three fatalities followed exposure from earthquake-generated dust clouds (208). Between 1991 and 1993, medical expenses associated with outbreaks were estimated at $66 million (113).
While no other fungal outbreaks in human populations have been attributed to dust storm exposure, the cited fungal prevalence studies in desert soils and dust storms have demonstrated diverse communities composed of both nonpathogenic and pathogenic genera and species. In most of these studies, only a fraction of the observed culturable community was identified, or the methods employed for identification, such as morphological or spore identification, limited the ability to identify pathogenic species. As a result, research has produced only an indication of the true community structure in any of the dust source regions. While they have yet to be identified in dust storm studies, fungal pathogens such as Histoplasma capsulatum, the causative agent of histoplasmosis, often associated with exposure to dust originating from dried bird or bat feces, are certainly a potential risk factor (31, 164). Table 3 lists the dust storm studies in which fungal CFU or spores have been identified, the genera known to contain pathogenic species, and, where information was available, the pathogenic species. Information available on these genera indicates that most are cosmopolitan in nature. These pathogenic or opportunistic pathogens are known to cause a wide range of human diseases (mild to fatal disseminating infections). Some of the fungi in Table 3 are known to be mild or potent allergens (species of Acremonium, Alternaria, Arthrinium, Aspergillus, Cladosporium, Curvularia, Emericella, Fusarium, Nigrospora, Paecilomyces, Pithomyces, Phoma, Penicillium, Torula, Trichophyton, and Ulocladium). Outside of human disease, an outbreak of aspergillosis was documented in a captive locust population (
40% of the population) in Bikaner, India, following a dust storm (239). Sahara/Sahel dust storms have also been identified as long-range transport mechanisms for the pathogen responsible for the Caribbean region-wide outbreak of Aspergillus infections (A. sydowii) in seafans (213, 245). The long-range atmospheric dispersal of fungal crop pathogens has been well documented. Brown and Hovmøller present a review of those data (24).
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In livestock populations, dust storms have been identified as a possible source of foot-and-mouth disease virus outbreaks that occurred in Korea and Japan. Some of the outbreaks followed Gobi/Takla Makan dust events (115, 175, 203). Although two studies (115, 175) screened dust samples for the presence of foot-and-mouth disease virus by reverse transcriptase PCR (>400 samples) with no positive results, the authors suggested additional testing before ruling out the transmission route. Griffin et al. hypothesized that foot-and-mouth disease virus outbreaks in Europe could result from long-range transmission in African dust based on the similarity of endemic (Africa) and outbreak serotypes, dust events and outbreak occurrences, and a favorable atmospheric route (over water) (81). Evidence of regional (European) airborne transmission of foot-and-mouth disease virus to downwind locations within the United Kingdom, from France across the English Channel to the United Kingdom, and from Germany over the Baltic Sea to Denmark, has been well documented (51, 69, 71, 72, 157, 217). Using an atmospheric model and inputting optimal climate and topography, Sorensen et al. estimated that 1,000 pigs excreting foot-and-mouth disease virus could infect cattle located 300 km downwind (217). Modeling was also used to demonstrate the 1988 atmospheric spread of pseudorabies virus between swine herds over an area of 150 km2 in Decatur County, IN (40, 75).
Cattle went blind and suffocated. When farmers cut them open, they found stomachs stuffed with fine sand. Horses ran madly against the storms. Children coughed and gagged, dying of something the doctors called "dust pneumonia." In desperation, some families gave away their children. The instinctive act of hugging a loved one or shaking someone's hand could knock two people down, for the static electricity from the dusters was so strong. Ike Osteen's life spans the flu epidemic of 1918, the worst depression in American history, and a world war that ripped apart the globe. Nothing compares to the black dusters of the 1930s, he says, a time when the simplest thing in lifetaking a breathwas a threat (58).
Incidence of pneumonia of unknown etiology in populations exposed to airborne desert dust storms has been reported throughout the course of time (18, 23, 121, 174, 248). In the American Dust Bowl era of the 1930s, the numbers of cases of pneumonia were 50 to 100% higher during dust periods than during previous low-dust years (23). In dust storm-impacted regions around the Aral Sea, pneumonia rates are the highest in the former USSR, and 50% of all childhood illnesses are respiratory (105, 237). Pneumonia from dust storm exposure has also been reported in the Middle East, especially those cases pertaining to deployed military personnel (14, 34, 121, 214). Of 15,459 surveyed military personnel who were deployed in Afghanistan or Iraq during 2003 and 2004, 69.1% reported some form of respiratory illness (204). Pneumonia acquired from exposure to inorganic and organic material in dust storms has been termed Al Eskan disease, Persian Gulf syndrome, Persian Gulf War syndrome, Gulf War syndrome, and desert dust pneumonitis (50, 109, 120, 121). In addition to pneumonia, adverse health conditions reported by military personnel who were deployed in the area include fatigue, fever, respiratory stress, arthromyoneuropathy, and neurological impairment, and epidemiological studies demonstrated higher prevalence in exposed/deployed groups than in controls (14, 50, 65, 86, 108, 116). In contrast, a number of studies designed to identify the incidence of disease in deployed versus nondeployed groups noted no identifiable differences between the groups (101, 106, 118, 134, 201). In China and the Himalayas, studies have shown that indigenous populations in dust areas have higher incidences of silicosis than do populations residing in nondust or low-dust areas (173, 202, 259). Cell culture studies have demonstrated that dust storm constituents can inhibit defense functions of alveolar macrophages and increase reactive oxygen species, causing DNA base damage (61, 186). Mouse- and rat-based inhalation studies have shown that desert dust causes increases in the levels of neutrophils, lymphocytes, eosinophils, interleukin-2 and -6, and tumor necrosis factor alpha and that responses are dose dependent (102, 137).
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Another method of impaction is the use of an air pump to move air over the surface of a petri dish (cassettes and strips are also used) containing nutrient agar. Airflow over nutrient agar is controlled by slits or holes that are arranged to distribute the airflow evenly over the agar surface and in some cases to control for particle size ranges. Numerous companies manufacture air pump devices, including the portable handheld Millipore M Air T Air Tester (Millipore Corporation, Bedford, MA) and the popular Andersen six-stage sampler (Andersen 6-STG; Graseby Andersen, Smyrna, GA) (12; K. R. Lentine, N. Le, J. Lemonnier, A. Entzmann, and M. Pickett, presented at the 99th General Meeting of the American Society for Microbiology, Chicago, IL, 30 May to 3 June 1999). The benefits of these types of samplers are ease of use, portability, cost, assessment of culturable populations of bacteria and fungi per volume of air, and, as in the case of the Andersen 6-STG-type sampler, the ability to determine the numbers of microorganisms associated with various size ranges of airborne particulates. Drawbacks to the use of these impactors are loss of viability due to impact stress, loss of recovery efficiency due to microorganisms not adhering to agar surfaces, low sample volumes due to low flow rates, and low recovery of ultrafine biological matter in the size range of viruses (220). Centrifugation has been used to collect microorganisms on container walls, wet or dry slides, or nutrient agar (petri dishes and strips, etc.) (249, 251, 257). The benefits of centrifugal concentration are the use of high flow rates (>100 liters min1) and efficient capture (251). The drawback of this method is the loss of viability due to impaction stress (257).
Impingement of microorganisms into a liquid matrix (via bubbling) is another method of capture used in aeromicrobiology (7, 27, 227). A widely used liquid impinger is the AGI-30 (Ace Glass Inc., Vineland, NJ), which utilizes a low flow rate to bubble air through a liquid matrix. Research has shown that the AGI-30 is a low-cost and efficient method of collecting aerosolized microorganisms for culture- and non-culture-based analyses (227). However, this impinger is constructed of glass and can be easily broken in the rigors of field studies. High-flow-rate liquid impinger units have been developed to detect low concentrations of microorganisms in the atmosphere and have also been utilized for culture- and non-culture-based analyses for the presence of bacteria, fungi, and viruses (17). The benefit of using liquid impingers for aeromicrobiology studies is that the liquid matrix can be split for various analyses to include media cultures, direct counts, molecular assays, and cell cultures. The drawbacks of liquid impingement include the low capture rate of some low-flow-rate impingers (the use of large-bore air lines and, thus, large bubble production in the liquid matrix), high cost (high-flow-rate impingers), loss of collection fluid to evaporation and violent bubbling (some of the high-flow-rate impingers limit this loss), low capture rate of virus-sized particles, and loss of viability (i.e., viral inactivation due to bubbling) (6).
Membrane filtration in which air is pumped through a porous membrane is also utilized in aeromicrobiology and has been used by a number of researchers in desert dust microbiology (27, 78, 79, 83, 117, 190). This method can be employed for both culture- and non-culture-based studies, is inexpensive, can be portable, and is highly efficient at trapping microorganisms larger than the pore size on the filter surface (111, 145). Filters commonly utilized for collection include cellulose-based, nylon, and glass fibers with pore sizes down to 0.02 µm (for viral analysis) (78). The drawbacks of filtration include desiccation of the microorganisms on the filter surface due to filtration rate and time (higher flow rates and longer filtration times), the preferential concentration of spore-forming microbes over other community members as non-spore formers are desiccated during rapid or long filtration times (culture-based studies), filter size (37 mm versus 47 mm; i.e., larger diameters limit stacking of cells in a high particle load environment), and filter type (a thicker filter can wick nutrients to cells, thereby limiting close-contact nutrient shock of stressed cells) (27, 83, 111, 150, 231).
In regard to these currently used methods of recovery, use of a high-volume liquid impinger for aeromicrobiology studies in general is the most versatile and arguably one of the most efficient capture methods available. While the capture efficiency of virus-range particles is a concern with today's machines, virus-based analyses are still possible. Furthermore, advances in technology should enhance the capture of all microbial size fractions and at the same time allow what no other isolation assay currently does: rapid large-volume sampling for the full suite of microbial types and the ability to split a single sample for multiple analyses.
23.0°C [room temperature]) (43, 79, 83, 117, 170, 185, 190). Several nutrient-based identification assays, such as the Analytab System (Analytab Products, Syosset, NY) and BioLog plates (Hayward, CA), are utilized in environmental studies. Although these are low-cost assays, they are subject to variation (i.e., reproducibility issues due to variation in cell densities and physiological state, etc.) and false-positive results (previously unclassified organisms producing similar or like carbon utilization patterns) (25, 119, 135). Recent advances in culture technology, such as the employment of single-cell encapsulation into microdroplets containing naturally occurring nutrients, have demonstrated improved recovery rates and hold promise for future studies (264). Microscopy is one of the oldest tools used for the study of bacteria and fungi. Identifications or descriptions are based on staining characteristics, cellular morphology, spore shape, the presence or absence of spores, and pigmentation. At the microscopic level, many organisms cannot be identified, due to similarities among species and genera and to significant differences in the education and experience of the investigator. Species- and strain-specific identifications are possible with the use of immunological (antigen-specific antibodies tagged with a reporter) and genetic (i.e., fluorescence in situ hybridization [FISH]) tools, as well as direct-count assays and physiological studies using nucleic acid or cellular stains, respectively (37, 48, 172, 183, 228, 241). Whereas stains that utilize direct-count assays are invaluable in assessing total cell counts in a sample, certain cells are known to resist staining, and similar-sized particles that are not cells may take up the stain, resulting in false-positive counts (27). Another limitation is that more than 104 cells per sample are required for useful data (27). The result is that microscopic methods can be prone to error. Such methods also require expertise and can be time-consuming (27).
Although sequence-based identification assays, such as those using oligonucleotides (dot blot assays and FISH, etc.), have served microbial ecologists well, the invention of nucleic acid amplification protocols such as PCR and nucleic acid sequence-based amplification has enabled researchers to assess community composition at the strain level efficiently and to detect organisms in the community that occur in very low numbers (42, 167, 182). Nucleic acid amplification methods target regions of conserved genes, such as those found in the ribosomal genes, for use in identification (42, 167). Once the target gene is amplified, the community amplicon can be evaluated with ecology-based gene chips or through the classical approach of clone library production and analysis (35, 253). Several other widely used types of postamplification analysis include denaturing gradient gel electrophoresis and temperature gradient gel electrophoresis (168). These assays produce a microbial community fingerprint that can be analyzed with specific group probes for individual band identification, or individual bands can be excised and sequenced directly. The primary benefits of PCR-based assays are ease of use as DNA and RNA extraction kits, PCR amplification kits, cloning kits, the availability of commercial sequencing facilities, and information on the community (culturable and nonculturable) are obtained. The primary drawbacks are the cost of cloning kits, the required expertise in sequence interpretation, debate among mycologists on the appropriateness of relying on DNA sequences alone to identify fungi, and the lack of a universal gene for virus ecology (211).
Phospholipid ester-linked fatty acid and intact phospholipid profiling can also be utilized to identify bacteria and fungi in both culture- and non-culture-based studies via unique lipid structures (63, 132, 246). The benefits of these assays are that they address viable biomass due to rapid phospholipid turnover (63, 246). The drawbacks are costs of analysis, overlapping profiles, biomass to cell count conversion, and compositional shift from variance in growth conditions (63).
With the rapid progression of technology, new and emerging tools, such as optical tweezers, phylogenic gene chips, chip use in cross-hybridization studies, cellular circuits, mass spectrometry, and the miniaturization of existing equipment, should greatly enhance our understanding of dust-borne microbial ecology through availability, affordability, adaptation, and use (38, 60, 123, 151, 171, 230, 253).
| CONCLUSIONS AND PERSPECTIVES |
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The prime question, of course, is related to risk: do microorganisms in dust clouds pose a risk to human health? The evidence of outbreaks of coccidiomycosis following dust storm exposure in the Americas demonstrates risk. Outside of this example, the risk from other pathogenic microorganisms is unknown, due to the limited number of studies and study design (all to date have been culture based, and none have been risk oriented). While some of the dust storm microbiology studies cited in this review have identified pathogenic microorganisms, information relative to concentrations over a realistic period of exposure does not exist, nor do we know the full extent of fate and survival issues as they relate to geographical variance and seasonal influences. The adaptation of existing and emerging molecular techniques will give us a clearer understanding in future studies. We need non-culture-based studies to advance this field in regard to issues in microbial ecology, biogeography, pathogen prevalence (fungal, bacterial, and viral), epidemiology, bacteria as carriers of potentially harmful genetic elements (i.e., phage related), microbial fate and survival, and risk. Integrated and global-scale collaborations need to be advocated and supported to allow multiple purchases of appropriate equipment (i.e., high-volume liquid impingers) for "true" matched studies in source and downwind environments. We also do not know what roles the synergistic influences of the many different constituents of dust play in human health. How does exposure to dust storms differ between source regions? When individuals who have never been exposed to desert environments (or dust storms) visit them (or are deployed in them), how is their health impacted in both the short and long terms? With the advent of the industrial age and the resulting widespread use and release of anthropogenic chemicals and emissions, are modern dust clouds more of a health threat than those that blew around the planet before the influence of humanity? How will climate change influence dust emissions and their associated microbial communities? The questions are many.
As if this point has not been made enough, I close this review with a quotation from a paper published by Fred C. Meier and Charles A. Lindbergh in 1935:
While it is generally known that bacteria, spores of higher fungi and pollen grains are present among dust particles in the atmosphere near the earth's surface, much detailed information of practical value remains to be revealed by further research (154).
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